2023
(63). Yi, Y., He, C., Klaproth, K., Merder, J., Li, P., Qi, Y., Fu, P., Li, S., Dittmar, T., Shi, Q.*, He, D.* (2023). Will various interpretation strategies of the same ultrahigh-resolution mass spectrometry data tell different biogeochemical stories? A first assessment based on natural aquatic dissolved organic matter. Limnology and Oceanography: Methods. doi: 10.1002/lom3.10548.
(62). Yi, Y., Liu, T.*, Merder, J., He, C., Bao, H., Li, P., Li, S., Shi, Q. & He, D.* (2023). Unraveling the Linkages between Molecular Abundance and Stable Carbon Isotope Ratio in Dissolved Organic Matter Using Machine Learning. Environmental Science & Technology. https://doi.org/10.1021/acs.est.3c00221
(61). Pan, Q., Hu, W., He, D., He, C., Zhang, L., & Shi, Q.* (2023). Machine-learning assisted molecular formula assignment to high-resolution mass spectrometry data of dissolved organic matter. Talanta, 259, 124484.
(60) Chen, Y., Sui, W., Wang, J., He, D., Dong, L., Wang, F.* (2023). Refractory humic-like dissolved organic matter fuels microbial communities in deep energy-limiting marine sediments. Science China Earth Sciences, Accepted.
(59) Wang, K., Fang, H.*, He, G., Huang, L., Cui, Z., Gao, Q., … & He, D. (2023). Optical and molecular diversity of dissolved organic matter in sediments of the Daning and Shennong tributaries of the Three Gorges Reservoir. Frontiers in Environmental Science. DOI:doi 10.3389/fenvs.2022.1112407.
(58) Hu, T., Luo, M.*, Qi, Y., He, D., Chen, L., Xu, Y., & Chen, D.* (2023). Molecular evidence for the production of labile, sulfur-bearing dissolved organic matter in the seep sediments of the South China Sea. Water Research, 233, 119732. https://doi.org/10.1016/j.watres.2023.119732.
(57) Wang, K., Pang, Y., Yi, Y., Yang, S., Wang, Y., He, C., Shi, Q., & He, D. *(2023) Response of dissolved organic matter chemistry to flood control of a large river reservoir during an extreme storm event. Water Research 230, 119565. https://www.sciencedirect.com/science/article/pii/S0043135423000015
(56).Liu, Z., Cai, R.*, Chen, Y., Zhuo, X., He, C., Zheng, Q., He, D., Shi, Q., Jiao, N.* (2023). Direct production of bio-recalcitrant carboxyl-rich alicyclic molecules evidenced by a bacterium-induced steroid degradation experiment. Microbiology Spectrum, e04693-22. https://journals.asm.org/doi/full/10.1128/spectrum.04693-22.
2022
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(53). Qi, Y., Xie, Q., Wang, J. J., He, D., Bao, H., Fu, Q. L., Su, S., Sheng, M., Li, S., Volmer, D., Wu, F., Jiang, G., Liu, C., & Fu, P.* (2022). Deciphering dissolved organic matter by Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS): from bulk to fractions and individuals. Carbon Research, 1(1), 1-22. https://link.springer.com/article/10.1007/s44246-022-00002-8
(52). Cui, X.*, Mucci, A., Bianchi, T. S., He, D., Vaughn, D., Williams, E. K., Wang, C., Smeaton, C., Koziorowska-Makuch, K., Faust, J., Plante, A., & Rosenheim, B. E. (2022). Global fjords as transitory reservoirs of labile organic carbon modulated by organo-mineral interactions. Science Advances, 8(46), eadd0610. https://www.science.org/doi/full/10.1126/sciadv.add0610
(51). Liu, J.*, Zhao, J., He, D., Huang, X., Jiang, C., Yan, H., Lin, G., & An, Z. (2022). Effects of plant types on terrestrial leaf wax long-chain n-alkane biomarkers: Implications and paleoapplications. Earth-Science Reviews, 104248. https://www.sciencedirect.com/science/article/pii/S0012825222003324
(50). Yi, Y., Li, S. L.*, Zhong, J., Wang, W., Chen, S., Bao, H., & He, D. (2022). The influence of the deep subtropical reservoir on the karstic riverine carbon cycle and its regulatory factors: Insights from the seasonal and hydrological changes. Water Research, 226, 119267. https://www.sciencedirect.com/science/article/pii/S004313542201212X
(49). Wen, Z., Shang, Y., Song, K.*, Liu, G., Hou, J., Lyu, L., Tao, H., Li, S., He, C., Shi, Q., & He, D. (2022). Composition of dissolved organic matter (DOM) in lakes responds to the trophic state and phytoplankton community succession. Water Research, 224, 119073. https://www.sciencedirect.com/science/article/pii/S0043135422010193
(48). He, C., He, D.*, Chen, C., & Shi, Q.* (2022). Application of Fourier transform ion cyclotron resonance mass spectrometry in molecular characterization of dissolved organic matter. Science China Earth Sciences, 1-18. https://link.springer.com/article/10.1007/s11430-021-9954-0
(47). Jiang, X., Liu, D.*, Li, Q., Tian, P., Wu, Y., Li, S., … & He, D. (2022). Connecting the Light Absorption of Atmospheric Organic Aerosols with Oxidation State and Polarity. Environmental Science & Technology, 56(18), 12873-12885. https://pubs.acs.org/doi/full/10.1021/acs.est.2c02202
(46). Shang, Y., Wen, Z., Song, K.*, Liu, G., Lai, F., Lyu, L., Li, S., Tao, H., Hou, J., Fang, C., He, C., Shi, Q., & He, D.* (2022). Natural versus anthropogenic controls on the dissolved organic matter chemistry in lakes across China: Insights from optical and molecular level analyses. Water Research, 221, 118779. https://www.sciencedirect.com/science/article/pii/S0043135422007321
(45). Sun, X., Li, P.*, Zhou, Y., He, C., Cao, F., Wang, Y., Shi, Q., & He, D.* (2022). Linkages Between Optical and Molecular Signatures of Dissolved Organic Matter Along the Yangtze River Estuary-to-East China Sea Continuum. Frontiers in Marine Science, 9, 933561. https://www.frontiersin.org/articles/10.3389/fmars.2022.933561/full
(44). Zhou, Y., Zhao, C., He, C., Li, P., Wang, Y., Pang, Y., Shi, Q., & He, D.* (2022). Characterization of dissolved organic matter processing between surface sediment porewater and overlying bottom water in the Yangtze River Estuary. Water Research, 215, 118260. https://www.sciencedirect.com/science/article/pii/S0043135422002238
(43). He, D.*, Ladd, S. N., Park, J., Sachs, J. P., Simoneit, B. R., Smoak, J. M., & Jaffé, R. (2022). Carbon and hydrogen isotopes of taraxerol in mangrove leaves and sediment cores: Implications for paleo-reconstructions. Geochimica et Cosmochimica Acta, 324, 262-279. https://www.sciencedirect.com/science/article/pii/S0016703722000916
(42). He, D.*, Li, P., He, C., Wang, Y., & Shi, Q. (2022). Eutrophication and watershed characteristics shape changes in dissolved organic matter chemistry along two river-estuarine transects. Water Research, 214, 118196. https://www.sciencedirect.com/science/article/pii/S0043135422001592
(41). Zhang, S., Li, X., He, D., Zhang, D., Zhao, Z., Si, H., & Wang, F.* (2022). Per-and poly-fluoroalkyl substances in sediments from the water-level-fluctuation zone of the Three Gorges Reservoir, China: Contamination characteristics, source apportionment, and mass inventory and loadings. Environmental Pollution, 299, 118895. https://www.sciencedirect.com/science/article/pii/S0269749122001099
(40). Wang, Y.*, Chen, H. H., Tang, R., He, D., Lee, Z., Xue, H., Wells, M., Boss, E., & Chai, F. (2022). Australian fire nourishes ocean phytoplankton bloom. Science of The Total Environment, 807, 150775. https://www.sciencedirect.com/science/article/pii/S0048969721058538
(39). Dai, J., Zhang, Q., Liu, J., Wen, S., Zhang, Y., He, D., & Du, Y.* (2022). Coprecipitation of organic matter, phosphate with iron: Implications for internal loadings of phosphorus in algae-dominated and macrophyte-dominated lakes. Frontiers in Environmental Science, 1062. https://www.frontiersin.org/articles/10.3389/fenvs.2022.953509/full?utm_source=dlvr.it&utm_medium=twitter
(38). Wang, K., Xiao, S., Liu, J., Li, P., He, C., Shi, Q., & He, D.* (2022). Spatial dynamics of dissolved organic matter among different segments of a large-scale reservoir in the water-level declining period. Frontiers in Environmental Science, 1187. https://www.frontiersin.org/articles/10.3389/fenvs.2022.962706/full?utm_source=dlvr.it&utm_medium=twitter
2021
(37). Hu, T., Luo, M.*, Wünsch, U. J., He, D., Gieskes, J., Xu, Y., Fang, J., & Chen, D.* (2021). Probing sedimentary DOM in the deepest sector of Earth’s surface. Marine Chemistry, 237, 104033. https://www.sciencedirect.com/science/article/pii/S0304420321001183
(36). Wen, Z., Shang, Y., Lyu, L., Liu, G., Hou, J., He, C., Shi, Q., He, D.*, & Song, K. (2021). Sources and composition of riverine dissolved organic matter to marginal seas from mainland China. Journal of Hydrology, 603, 127152. https://www.sciencedirect.com/science/article/pii/S0022169421012026
(35). Tao, K., Xu, Y., Wang, Y., Wang, Y., & He, D.* (2021). Source, sink and preservation of organic matter from a machine learning approach of polar lipid tracers in sediments and soils from the Yellow River and Bohai Sea, eastern China. Chemical Geology, 582, 120441. https://www.sciencedirect.com/science/article/pii/S0009254121003843
(34). Wang, K., Li, P., He, C., Shi, Q., & He, D.* (2021). Density currents affect the vertical evolution of dissolved organic matter chemistry in a large tributary of the Three Gorges Reservoir during the water-level rising period. Water Research, 204, 117609. https://www.sciencedirect.com/science/article/pii/S0043135421008046
(33). Wang, K., Pang, Y., He, C., Li, P., Xiao, S., Shi, Q., & He, D.* (2021). Three Gorges Reservoir construction induced dissolved organic matter chemistry variation between the reservoir and non-reservoir areas along the Xiangxi tributary. Science of The Total Environment, 784, 147095. https://www.sciencedirect.com/science/article/pii/S0048969721021653
(32). Wang, K., Li, P., He, C., Shi, Q., & He, D.* (2021). Hydrologic heterogeneity induced variability of dissolved organic matter chemistry among tributaries of the Three Gorges Reservoir. Water Research, 201, 117358. https://www.sciencedirect.com/science/article/pii/S004313542100556X
(31). Li, P., Zhao, C., Liu, K., Xiao, X., Wang, Y., Wang, Y., & He, D.* (2021). Anthropogenic Influences on Dissolved Organic Matter in Three Coastal Bays, North China. Frontiers in Earth Science, 9, 575. https://www.frontiersin.org/articles/10.3389/feart.2021.697758/full
(30). Wang, K., Pang, Y., Gao, C., Chen, L., Jiang, X., Li, P., He, C., Shi, Q., & He, D.* (2021). Hydrological management affected dissolved organic matter chemistry and organic carbon burial in the Three Gorges Reservoir. Water Research, 199, 117195. https://www.sciencedirect.com/science/article/pii/S0043135421003936
(29). Zhao, C., Zhou, Y., Pang, Y., Zhang, Y., Huang, W., Wang, Y., & He, D.* (2021). The optical and molecular signatures of DOM under the eutrophication status in a shallow, semi-enclosed coastal bay in southeast China. Science China Earth Sciences, 64(7), 1090-1104. https://link.springer.com/article/10.1007/s11430-020-9728-4
(28). Wang, K., Pang, Y., Li, Y., He, C., Shi, Q., Wang, Y., & He, D.* (2021). Characterizing Dissolved Organic Matter Across a Riparian Soil–Water Interface: Preliminary Insights from a Molecular Level Perspective. ACS Earth and Space Chemistry, 5(5), 1102-1113. https://pubs.acs.org/doi/full/10.1021/acsearthspacechem.1c00029
(27). Pang, Y., Wang, K., Sun, Y., Zhou, Y., Yang, S., Li, Y., He, C., Shi, Q., & He, D.* (2021). Linking the unique molecular complexity of dissolved organic matter to flood period in the Yangtze River mainstream. Science of The Total Environment, 764, 142803. https://www.sciencedirect.com/science/article/pii/S0048969720363324
(26). Zhou, Y., He, D.*, He, C., Li, P., Fan, D., Wang, A., Zhang, K., Chen, B., Zhao, C., Wang, Y., Shi, Q., & Sun, Y. (2021). Spatial changes in molecular composition of dissolved organic matter in the Yangtze River Estuary: Implications for the seaward transport of estuarine DOM. Science of The Total Environment, 759, 143531. https://www.sciencedirect.com/science/article/pii/S0048969720370625
(25). He, D., Rivera-Monroy, V. H.*, Jaffé, R., & Zhao, X. (2021). Mangrove leaf species-specific isotopic signatures along a salinity and phosphorus soil fertility gradients in a subtropical estuary. Estuarine, Coastal and Shelf Science, 248, 106768. https://www.sciencedirect.com/science/article/pii/S0272771419311151
(24). Zhang, Y., Sun, Y., Liu, B., Wang, Y., Xie, W., Wang, P., Zhang, C., & He, D.* (2021). Spatiotemporal distribution and source variations of hydrocarbons in surface sediments from the Pearl River Estuary, Southern China. Journal of Soils and Sediments, 21(1), 499-511. https://link.springer.com/article/10.1007/s11368-020-02783-0
2020
(23). He, D., Wang, K., Pang, Y., He, C., Li, P., Li, Y., Xiao, S., Shi, Q., & Sun, Y.* (2020). Hydrological management constraints on the chemistry of dissolved organic matter in the Three Gorges Reservoir. Water Research, 187, 116413. https://www.sciencedirect.com/science/article/pii/S0043135420309489
(22). Lu, Q., He, D., Pang, Y., Zhang, Y., He, C., Wang, Y., Zhang, H., Shi, Q., & Sun, Y.* (2020). Processing of dissolved organic matter from surface waters to sediment pore waters in a temperate coastal wetland. Science of The Total Environment, 742, 140491. https://www.sciencedirect.com/science/article/pii/S0048969720340134
(21). He, D.*, Ladd, S. N., Saunders, C. J., Mead, R. N., & Jaffé, R. (2020). Distribution of n-alkanes and their δ2H and δ13C values in typical plants along a terrestrial-coastal-oceanic gradient. Geochimica et Cosmochimica Acta, 281, 31-52.
(20). Liu, B., He, Y., Zhang, Y., Sun, Y., Wang, Y., & He, D.* (2020). Natural and anthropogenic organic matter cycling between coastal wetlands and rivers: a case study from Liao River Delta. Estuarine, Coastal and Shelf Science, 236, 106610. https://www.sciencedirect.com/science/article/pii/S0272771419306183
2019
(19). Zhang, K., He, D.*, Cui, X., Fan, D., Xiao, S., & Sun, Y. (2019). Impact of anthropogenic organic matter on the distribution patterns of sediment microbial community from the Yangtze River, China. Geomicrobiology Journal, 36(10), 881-893. https://www.tandfonline.com/doi/abs/10.1080/01490451.2019.1641772
(18). He, C., Pan, Q., Li, P., Xie, W., He, D., Zhang, C., & Shi, Q.* (2019). Molecular composition and spatial distribution of dissolved organic matter (DOM) in the Pearl River Estuary, China. Environmental Chemistry, 17(3), 240-251. https://www.publish.csiro.au/en/EN19051
(17). He, D.*, He, C., Li, P., Zhang, X., Shi, Q., & Sun, Y. (2019). Optical and molecular signatures of dissolved organic matter reflect anthropogenic influence in a coastal river, Northeast China. Journal of Environmental Quality, 48(3), 603-613. https://acsess.onlinelibrary.wiley.com/doi/abs/10.2134/jeq2018.09.0330
(16). Wang, K., Pang, Y., He, C., Li, P., Xiao, S., Sun, Y., Pan, Q., Zhang, Y., Shi, Q., & He, D.* (2019). Optical and molecular signatures of dissolved organic matter in Xiangxi Bay and mainstream of Three Gorges Reservoir, China: Spatial variations and environmental implications. Science of The Total Environment, 657, 1274-1284. https://www.sciencedirect.com/science/article/pii/S0048969718349623
2018
(15). He, D.*, Zhang, K., Cui, X., Tang, J., & Sun, Y. (2018). Spatiotemporal variability of hydrocarbons in surface sediments from an intensively human-impacted Xiaoqing River-Laizhou Bay system in the eastern China: occurrence, compositional profile and source apportionment. Science of The Total Environment, 645, 1172-1182. https://www.sciencedirect.com/science/article/pii/S0048969718326846
(14). He, D.*, Simoneit, B. R., Cloutier, J. B., & Jaffé, R. (2018). Early diagenesis of triterpenoids derived from mangroves in a subtropical estuary. Organic Geochemistry, 125, 196-211. https://www.sciencedirect.com/science/article/pii/S0146638018302080
(13). Regier, P., He, D., Saunders, C. J., Jara, B., Hansen, C., Newman, S., … & Jaffé, R.* (2018). Sheet flow effects on sediment transport in a degraded ridge‐and‐slough wetland: Insights using molecular markers. Journal of Geophysical Research: Biogeosciences, 123(10), 3124-3139. https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2018JG004648
(12). He, D.*, Zhang, K., Tang, J., Cui, X., & Sun, Y. (2018). Using fecal sterols to assess dynamics of sewage input in sediments along a human-impacted river-estuary system in eastern China. Science of the Total Environment, 636, 787-797. https://www.sciencedirect.com/science/article/pii/S0048969718314931
(11). He, D.*, Simoneit, B. R., & Jaffé, R. (2018). Environmental factors controlling the distributions of Botryococcus braunii (A, B and L) biomarkers in a subtropical freshwater wetland. Scientific Reports, 8(1), 1-9. https://www.nature.com/articles/s41598-018-26900-9
2017
(11). He, D., Zhu, C., Zhang, K., Xiao, S., Cui, X., & Sun, Y.* (2017). Source and composition of sedimentary organic matter in the head of Three Gorges Reservoir: a multiproxy approach using δ13C, lignin phenols, and lipid biomarker analyses. Acta Geochimica, 36(3), 452-455. https://link.springer.com/article/10.1007/s11631-017-0189-8
(10). He, D.*, Ladd, S. N., Sachs, J. P., & Jaffé, R. (2017). Inverse relationship between salinity and 2H/1H fractionation in leaf wax n-alkanes from Florida mangroves. Organic Geochemistry, 110, 1-12. https://www.sciencedirect.com/science/article/pii/S0146638016302881
2016
(9). He, D., Anderson, W. T., & Jaffé, R.* (2016). Compound specific δD and δ13C analyses as a tool for the assessment of hydrological change in a subtropical wetland. Aquatic Sciences, 78(4), 809-822. https://link.springer.com/article/10.1007/s00027-016-0473-4
(8). Rushdi, A. I., Oros, D. R., Al-Mutlaq, K. F., He, D., Medeiros, P. M.*, & Simoneit, B. R. (2016). Lipid, sterol and saccharide sources and dynamics in surface soils during an annual cycle in a temperate climate region. Applied Geochemistry, 66, 1-13. https://www.sciencedirect.com/science/article/pii/S0883292715300731
(7). He, D.*, Simoneit, B. R., Xu, Y., & Jaffé, R. (2016). Occurrence of unsaturated C25 highly branched isoprenoids (HBIs) in a freshwater wetland. Organic Geochemistry, 93, 59-67. https://www.sciencedirect.com/science/article/pii/S0146638016000073
2015
(6). He, D.*, Simoneit, B. R., Jara, B. §, & Jaffé, R. (2015). Compositions and isotopic differences of iso-and anteiso-alkanes in black mangroves (Avicennia germinans) across a salinity gradient in a subtropical estuary. Environmental Chemistry, 13(4), 623-630. https://www.publish.csiro.au/en/en15128
(5). He, D., Simoneit, B. R., Jara, B. §, & Jaffé, R.* (2015). Gas chromatography mass spectrometry-based profiling of alkyl coumarates and ferulates in two species of cattail (Typha domingensis P., and Typha latifolia L.). Phytochemistry Letters, 13, 91-98. https://www.sciencedirect.com/science/article/pii/S187439001500107X
(4). He, D.*, Simoneit, B. R., Jara, B. §, & Jaffé, R. (2015). Occurrence and distribution of monomethylalkanes in the freshwater wetland ecosystem of the Florida Everglades. Chemosphere, 119, 258-266. https://www.sciencedirect.com/science/article/pii/S0045653514007905
2014
(3). Sanchez-Hernandez, Y., Florentin, J. M. M.*, Melinte-Dobrinescu, M. C., He, D., & Butler, S. K. (2014). Assessing the factors controlling high sedimentation rates from the latest Barremian–earliest Aptian in the hemipelagic setting of the restricted Organyà Basin, NE Spain. Cretaceous Research, 51, 1-21. https://www.sciencedirect.com/science/article/pii/S0195667114001025
(2). He, D., Mead, R. N., Belicka, L., Pisani, O., & Jaffé, R.* (2014). Assessing source contributions to particulate organic matZZter in a subtropical estuary: a biomarker approach. Organic Geochemistry, 75, 129-139. https://www.sciencedirect.com/science/article/pii/S0146638014001740
2010
(1). Xiang, L.X., He, D. (co-first author), Dong, W. R., Zhang, Y.W. §, Shao, J.Z.* (2010). Deep sequencing-based transcriptome profiling analysis of bacteria-challenged Lateolabrax japonicus reveals insight into the immune-relevant genes in marine fish. BMC Genomics, 11(1), 1-21. https://link.springer.com/article/10.1186/1471-2164-11-472
